❯ brew update \&\& brew upgrade \&\& brew cleanup
==> Updating Homebrew…
fatal: It seems that there is already a rebase-merge directory, and
I wonder if you are in the middle of another rebase. If that is the
case, please try
git rebase (–continue | –abort | –skip)
If that is not the case, please
rm -fr “.git/rebase-merge”
and run me again. I am stopping in case you still have something
valuable there.
The error you’re seeing during brew update — “fatal: It seems that there is already a rebase-merge directory…” — means a previous Homebrew git rebase operation was interrupted and left temporary files behind, blocking new updates.
How to Fix It
- Check for and remove the stray rebase directory:
- For Intel Macs:
find /usr/local/Homebrew -name "rebase-merge"
- For Apple Silicon (M1/M2/M3):
find /opt/Homebrew -name "rebase-merge"
If a directory like /opt/Homebrew/Library/Taps/homebrew/homebrew-core/.git/rebase-merge appears, remove it:
rm -rf /opt/Homebrew/Library/Taps/homebrew/homebrew-core/.git/rebase-merge
After that, retry:
brew update && brew upgrade
This resolves the issue for most users.^1
- If the rebase is still active, abort it:
If you prefer not to delete anything immediately, you can instead run:
cd /opt/homebrew
git rebase --abort
brew update
This safely cancels the stuck rebase and resumes normal operation.^1
- Alternative recovery (safer reset command):
If both fail or the problem returns:
brew update-reset
This resets Homebrew’s git repositories to a clean state, ensuring no leftover rebase data remains.^2
Why It Happens
Homebrew uses Git internally to manage its repositories. Updates sometimes interrupt mid-rebase (e.g., due to network loss or macOS sleep), leaving .git/rebase-merge folders behind. Future updates stop to prevent data loss.^2
Summary of Fixes
| Situation | Command to Use | Notes |
|---|---|---|
| Stale rebase-merge directory | rm -rf $(find /opt/homebrew -name "rebase-merge") | Most common fix ^1 |
| Ongoing rebase | git rebase --abort && brew update | Use if rebase was started but unfinished ^1 |
| Persistent problems | brew update-reset | Performs a full git restore of Homebrew ^2 |
After applying one of these, your brew update && brew upgrade && brew cleanup chain should work normally again.
^10^12^14^16^18^20^4^6^8
⁂